RetrogeneDB ID: | retro_ecab_241 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:51968910..51969754(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000023806 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKK-SQSE |
MRRQRNMF..R.QDK..EKELNET...NLPDKE.K...I.ML.DL.RR.D..SEN.NKE.ENIKK...SE | |
Retrocopy | MRRQRNMFQVREQDKSSEKELNETEINNLPDKEYKRIVIKMLTDLWRRIDEYSENCNKEFENIKK>NPSE |
Parental | MKSTILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRII |
.K.TI..MKNS.EG.NSR.DDTEEWI.KLD.KLEE..Q..N................LWDNIK..N..I. | |
Retrocopy | LKNTIMEMKNSPEGINSRIDDTEEWISKLDKKLEELTQ>LNXXXXXXXXXXEDSLRDLWDNIKSTNTCIT |
Parental | SVPGGEERHKGEENLFEEII-DENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDKERIL |
S.P.GEER.KG.ENLF.EI...ENFPNL.KETDIQVQE.QRAPNK..PKR..P.HIIIKMS.I.DKERIL | |
Retrocopy | SAPEGEERDKGAENLFKEIK<AENFPNLKKETDIQVQEAQRAPNKMNPKRAPPRHIIIKMSRIGDKERIL |
Parental | KAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQ |
KA.RER..VT.KG.PIR.SADFSAETLQ.TREWH.IFKVLKGKNL.PRI.Y....SFRMEG.IK.FPDKQ | |
Retrocopy | KAIRERQQVTHKGNPIRVSADFSAETLQVTREWHNIFKVLKGKNL*PRISYTAKLSFRMEGRIKSFPDKQ |
Parental | NVKE |
..KE | |
Retrocopy | KLKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .12 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .08 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |