>retro_ecab_371
TACCTCCTTATCCTGTTCATTGAACAGCTCAGCAATCGAGTAAAGGACTTCACGGTCATATCCTGTTCCACCACCGAGCT
GCCCCTTGCAGTGTCCTAGGACAGGATCTCACTGGGAAGGCTCTGCATCTCGATCCACATGCAGGATGCCGTGTACTTCC
TGCAGCAGTTCGGGTTTTCAGAGAAAGATGTTGATGAAAGAAAGGGAATTGTTCTTGATACCAACTTGTACTTCTTAGCA
TTGAACTTCTTTGTCACAGCATTTCACTTTCTTCTTGATTTCCTGGCCTTTAAAAATGATATCAGTTTCCAGAATAAAAA
GAAGAGCATGATTGGGATGTCTCCCAAAGCAGTGCACTGGTGCTGCTTCAGTACGGTGGCCATCTTCCTGTCCCTGCCGG
ACAAGCAGACGAGCCTCCTGGGGCTGGTCTCGGTGGGCATCGGAGCTGCCATCGAGCTATGAAAAGTGAAAAAGGCATTG
AAAATGACTTATTTGAGAATCCTAAGACCTGAGTTTTAGTTTGCCACTTACAGTGAACCTGAAAGGAAAACCAAAGAATA
TGACACCTGGGCCATGAGGTATTTGCATTACCTGCTCTGCATTCCATGTATCCAGGGTGCTATCTATTTGCTGCAGAACA
ACAAGTATAATCGTTGATATTCTCAGTTGATCAACAGCTTCATCAATAGGGTATATGCTTTTGGCTTCCTCTTTGTGCTG
CTAGAGCTCTTTGTGAACTAAAAGATGAAGTCGGCAGTGTACCTGCCCAGGAAAGCCTTCACCTATAAGAACTTCAGCAC
CTTCATTGATGATGTCTTTGCCTTCATCATCATCATGCCCACCTCCCACCAGCTGGTGTGTTTCAGGGACGATGTGGTGT
TCCTTGTTTAGCTCTAGCAACAATGGCTTTATCCAGGGAGCAAGAGCAGAGTGGATGAATTTGGTGAGTCCTGCAAGGAG
AAGCCG
ORF - retro_ecab_371 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.21 % |
Parental protein coverage: |
60.15 % |
Number of stop codons detected: |
7 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKISLGRLRFWIHMQDAVFSLQQFGFSEKDADEVKGI |
| YL.ILFI.QLSNRVKD..VI..STTELPL.VS.D.ISLGRL...IHMQDAV..LQQFGFSEKD.DE.KGI |
Retrocopy | YLLILFIEQLSNRVKDFTVISCSTTELPLAVS*DRISLGRLCISIHMQDAVYFLQQFGFSEKDVDERKGI |
|
Parental | FVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKTMIGMSTKAGLMACFLGIFSVLLWVDDQTSLL |
| ..DTNLYFLAL.FFV.AFH.L.DFLAFKNDISF..KKK.MIGMS.KA....CF......L...D.QTSLL |
Retrocopy | VLDTNLYFLALNFFVTAFHFLLDFLAFKNDISFQNKKKSMIGMSPKAVHWCCFSTVAIFLSLPDKQTSLL |
|
Parental | VLVPAGIRSAIELWKVKKALKMTVVWRGLRPQFQFGTYSESERKTEEYDTQAMRYLSYLLYPLCVGGAVY |
| .LV..GI..AIEL.KVKKALKMT...R.LRP.F.F.TYSE.ERKT.EYDT.AMRYL.YLL...C..GA.Y |
Retrocopy | GLVSVGIGAAIEL*KVKKALKMTYL-RILRPEF*FATYSEPERKTKEYDTWAMRYLHYLLCIPCIQGAIY |
|
Parental | SLLNVKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDVFAFIITM |
| .L.N.KY...YS.LINSF.N.VYAFGFLF.L..LFVN.KMKS...LP.KAFTYK.F.TFIDDVFAFII.M |
Retrocopy | LLQNNKYNR*YSQLINSFINRVYAFGFLFVLLELFVN*KMKSAVYLPRKAFTYKNFSTFIDDVFAFIIIM |
|
Parental | PTSHRLACFRDDVVFLVYLYQRWLYPVDKSRVNEFGESYEEKP |
| PTSH.L.CFRDDVVFLV.L.Q.WLYP..KSRV.EFGES..EKP |
Retrocopy | PTSHQLVCFRDDVVFLV*L*QQWLYPGSKSRVDEFGESCKEKP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
25 .80 RPM |
SRP021940_cerebellum |
0 .00 RPM |
37 .81 RPM |
SRP021940_embryo |
0 .15 RPM |
44 .62 RPM |
SRP021940_placental_villous |
0 .24 RPM |
66 .25 RPM |
SRP021940_synovial_membrane |
0 .16 RPM |
51 .58 RPM |
SRP021940_testis |
0 .13 RPM |
131 .21 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_371 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_371 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_371 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.