RetrogeneDB ID: | retro_ecab_399 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 17:48296178..48296673(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR1 | ||
Ensembl ID: | ENSECAG00000019520 | ||
Aliases: | None | ||
Description: | signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] |
Percent Identity: | 62.72 % |
Parental protein coverage: | 63.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATF-EYSFIPA-EPMGGRPFGLVINLN-YKDLNGNVFQD |
DASF.YPQD.QFYIQN.T.L.LNT..P..RQA...E..FIPA.EPMGG.P..LV.N.N..KDLNG.VFQD | |
Retrocopy | DASFHYPQDHQFYIQNITVLHLNTMGPLKRQANV<ESPFIPA*EPMGG*PCDLVMNVN<FKDLNGTVFQD |
Parental | AVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTASQNDVDMS-WI |
A.FNQTVT..ERED.LDGETI...MFLAG..LLV.V.L.QLLE.R..K....K.EM......D......I | |
Retrocopy | AIFNQTVTTNEREDVLDGETILTHMFLAGFELLVIVELYQLLEFRNQKNSTWKIEMNASDLSDANVN<FI |
Parental | PQETLNQINKASPRRLPRKRAQKRSVGSD |
P...LNQINKASPR.LPRK.A.KR..GSD | |
Retrocopy | PHKALNQINKASPRSLPRKQARKRWMGSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 60 .56 RPM |
SRP021940_cerebellum | 0 .00 RPM | 11 .74 RPM |
SRP021940_embryo | 0 .00 RPM | 39 .87 RPM |
SRP021940_placental_villous | 0 .00 RPM | 47 .68 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 34 .26 RPM |
SRP021940_testis | 0 .00 RPM | 19 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022731 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015772 | 1 retrocopy | |
Equus caballus | ENSECAG00000019520 | 1 retrocopy |
retro_ecab_399 ,
|
Echinops telfairi | ENSETEG00000020111 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009083 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014234 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022608 | 1 retrocopy |