>retro_ecab_407
GAGAGCATGAACATCAGAATGGATCAAGGAGAAGAAAGAATCTGTGAGTTTGAAGACAGGAACTTGAAAATTATCTAGTC
AGAGGAGAACAAAGAATAGGGATTGAAACAGAGTAAAGAAAGCCTACATGATCTATGAGATACCATTCAAAGAACCAATT
TGTGAATATTTGGTGTTCCAGAAAGAGAAGAGAGGGGACAGGGAGAAGAAAGCTTATTTAAAGAAATAATGGTTCAGAAG
TTCCCAAATCTGGGGAAAGATTTGAATATCTAAGTTCATGAAGCTCACAGATCACCAAATAAACCCAACTTAAAGAGATC
CTCTCTAGACACATTATA
ORF - retro_ecab_407 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.39 % |
Parental protein coverage: |
63.28 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | ESINNRMDQAEET-CELEDRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTE |
| ES.N.RMDQ.EE..CE.EDR...II.SEENKE...K..K.SL.....TI...N..I.G.PE.EE.....E |
Retrocopy | ESMNIRMDQGEERICEFEDRNLKII*SEENKE*GLKQSKESLHDL*DTIQRTNL*IFGVPEREERGQGEE |
|
Parental | SLFKEIIAENFPNLGKKLDLQVHEANRTPNYIKAKRPS-PRHIV |
| SLFKEI....FPNLGK.L...VHEA.R.PN....KR.S..RHI. |
Retrocopy | SLFKEIMVQKFPNLGKDLNI*VHEAHRSPNKPNLKRSS<SRHII |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_407 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_407 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_407 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
11 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000012904 | 11 retrocopies |
retro_ecab_1003, retro_ecab_1068, retro_ecab_1117, retro_ecab_155, retro_ecab_407 , retro_ecab_695, retro_ecab_702, retro_ecab_768, retro_ecab_856, retro_ecab_877, retro_ecab_906,
|