RetrogeneDB ID: | retro_ecab_521 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:73224658..73225403(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003435 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.29 % |
Parental protein coverage: | 84.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKN |
RQ...FQV.EQDKT.EK.LNETEI.NL..K..KQKV....TDLGRRMDE.SENFN.ELENI.K.QSE... | |
Retrocopy | RQKNMFQVREQDKTSEKDLNETEIKNLSEKECKQKVINMFTDLGRRMDELSENFNNELENIEKNQSEIRI |
Parental | TIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEK-MKKTD-SLRDLWDNIKCTKIRITGVPE |
TI.EMKN.L.GLN.RVDD.EE..S.LDERLEE..QAEQ.....MKK...SLRDLWDNIKCT.I..T.VPE | |
Retrocopy | TILEMKNLLKGLNNRVDDKEEQVSELDERLEEIIQAEQXXXE<MKKNEESLRDLWDNIKCTNIHVTRVPE |
Parental | -EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAAR |
..E.DKGAE......IAENFP....E.D.Q.QEAQ.APN.IN.KR.T.RH.I.K.S.....KERIL..AR | |
Retrocopy | RQERDKGAENLFEEIIAENFPNIR*ETDIQAQEAQRAPNQINLKRPTSRHSIIKKSGI-KDKERILQTAR |
Parental | ERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVL-NRKKP |
.RQ..TYK...IRLS.D.S.E.LQ.RR.WH.IFKVL..RKKP | |
Retrocopy | *RQKLTYKRSPIRLSVDFSVEILQTRREWHNIFKVL<ERKKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521 , retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |