>retro_ecab_527
GAATGGTGTAAACAGCTTATAGCTTCTAGCATTTCTAGTCAGATTTCAGGTCCAGTGACATCAGAAAATGTATCCAGAGA
TTACAAGGCTCTAAGAGATGGAAATAAGCTGGCACAGATGGAAGAAGCACCACTTTTTCCAGGAGAGTCGATCAAGGCCG
TTGTGAAAGACGTCACGTATGTCTGCCCATTTATGGAAGCAGTGAGTGGAACCCTGACAGTGACTGACTTCAAGAGGTAC
TTCAGAAATGTAGAGGGACCCACATTTCGTCCTTGATGTTCCCCTGGGTGTGATCAGCAGAGTTGAGAAGATTGGCGCGC
AGAGCCACGAGGACAATTCTTGTGGTATAGAGATCGTGTGCAAGGATATGAGGAACTTACGACTTGCTTACAAACAGGAA
GAACAGAGTAAACTGGGGATATTTGAAAACCTCACCGAACGTGCATTTCCTCTTTCCAACGGACAGGCACTCTTTGCATT
CAACCATAAAGAGAAATTTCCAATTAATGCATGGAAAGTTTATGATCCAGTATCTGAATATAAGAGACAGGGCTTGCCAA
ATGAGAGTTGGAAAATATCCAAAGTAAACAGTAATTATGAGCTCTGTGACACCTACCCTGCCATCATTGTTGTGCCAACT
AGTGTGAAAGATGATGACCTTTCAAAAGTGGCAGCCTTTCGAGCAAAAGGCAGAGTCCCTGTGTTGTCATGGATTCATCC
AGAAAGTGAGGCAACGATTACCCGTTGCAGCCAGCTACTTGTGGGTCCCAATGATAAATGCTGCAAAGAAGATGAAAAAT
ACTTGCAAACAATAATGGATGCTTATGCACAGTCTCACAAACTTATCATCTTTGATGCCCGACAAAACAGTGTTGCTGAT
ACTAACAAGGCAAAGGGTGGAGGATATGAAACTGAAAGTGCTTACCCCAACGCAGAACTCGTGTTCTTGGAGATCCACAA
CATTCACGTGTTGAGAGAGTCACTACGTAAATTGAAAGAGATTGTGCACCCTTCCATCGATGAGACACAGTGGCTGTCCA
ACGTGGATGGGACGCATTGGCTAGAGTATATAAGGATGCTTCTTGCTGGGGCAGTAAGAATTGCCGATAAAATAGAATCT
GGGAAAACTTCGGTGGTGGTGCATTGCAGCGATGGTTGGGACCGAACAGCCCAGCTGATGTCTCCGGCCATGCTGATGTT
GGACAGTTATTATCGTACCATTAAAGGGTTCGAGGCTCTCATAGAAAAGGAGTGGATCAGCTTTGGACATAAGTTTGCAC
TGTGTGTG
ORF - retro_ecab_527 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.04 % |
Parental protein coverage: |
69.81 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EWCKQLIAATISSQISGSVTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKAIVKDVMYICPFMGAVSG |
| EWCKQLIA..ISSQISG.VTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKA.VKDV.Y.CPFM.AVSG |
Retrocopy | EWCKQLIASSISSQISGPVTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKAVVKDVTYVCPFMEAVSG |
|
Parental | TLTVTDFKMYFKNVERDPHF-VLDVPLGVISRVEKIGAQSHGDNSCGIEIVCKDMRNLRLAYKQEEQSKL |
| TLTVTDFK.YF.NVE..P.F.VLDVPLGVISRVEKIGAQSH.DNSCGIEIVCKDMRNLRLAYKQEEQSKL |
Retrocopy | TLTVTDFKRYFRNVE-GPTF>VLDVPLGVISRVEKIGAQSHEDNSCGIEIVCKDMRNLRLAYKQEEQSKL |
|
Parental | GIFENLTKHAFPLSNGQALFAFNYKEKFPINGWKVYDPVSEYKRQGLPNESWKISKVNSNYELCDTYPAI |
| GIFENLT..AFPLSNGQALFAFN.KEKFPIN.WKVYDPVSEYKRQGLPNESWKISKVNSNYELCDTYPAI |
Retrocopy | GIFENLTERAFPLSNGQALFAFNHKEKFPINAWKVYDPVSEYKRQGLPNESWKISKVNSNYELCDTYPAI |
|
Parental | IVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQATITRCSQPLVGPNDKRCKEDEKYLQTIMDANAQS |
| IVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPES.ATITRCSQ.LVGPNDK.CKEDEKYLQTIMDA.AQS |
Retrocopy | IVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESEATITRCSQLLVGPNDKCCKEDEKYLQTIMDAYAQS |
|
Parental | HKLIIFDARQNSVADTNKAKGGGYESESAYPNAELVFLEIHNIHVMRESLRKLKEIVYPSIDEARWLSNV |
| HKLIIFDARQNSVADTNKAKGGGYE.ESAYPNAELVFLEIHNIHV.RESLRKLKEIV.PSIDE..WLSNV |
Retrocopy | HKLIIFDARQNSVADTNKAKGGGYETESAYPNAELVFLEIHNIHVLRESLRKLKEIVHPSIDETQWLSNV |
|
Parental | DGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFEALIEKEW |
| DGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQL.S.AMLMLDSYYRTIKGFEALIEKEW |
Retrocopy | DGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLMSPAMLMLDSYYRTIKGFEALIEKEW |
|
Parental | ISFGHKFALRV |
| ISFGHKFAL.V |
Retrocopy | ISFGHKFALCV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
6 .97 RPM |
SRP021940_cerebellum |
0 .31 RPM |
21 .03 RPM |
SRP021940_embryo |
0 .31 RPM |
16 .88 RPM |
SRP021940_placental_villous |
0 .00 RPM |
16 .50 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
10 .57 RPM |
SRP021940_testis |
0 .06 RPM |
3 .77 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_527 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_527 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_527 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.