RetrogeneDB ID: | retro_ecab_593 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 22:27181715..27181967(-) | ||
Located in intron of: | ENSECAG00000014135 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSRB2 | ||
Ensembl ID: | ENSECAG00000013072 | ||
Aliases: | None | ||
Description: | methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:17061] |
Percent Identity: | 68.6 % |
Parental protein coverage: | 54.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SLAKSEWQKKLTPEQ-FYVTREKGTEPPFSGIYLNNEESGMYHCVCCDS-PLFSSEKKYSSGTGWPSFSE |
SL.KSE..KK.TPEQ.F.V.REKG...PF.GIYL...ESG..HCVCCDS.PL.SSE.K..SG..WPSFSE | |
Retrocopy | SLTKSELRKKRTPEQ>FCVRREKGSDLPFGGIYLSHRESGGHHCVCCDS<PLLSSERKHGSGPRWPSFSE |
Parental | AHGTSGSDESKTGILR |
AHGTSGS.ES.TG..R | |
Retrocopy | AHGTSGSAESSTGTQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 2 .13 RPM |
SRP021940_cerebellum | 0 .00 RPM | 2 .44 RPM |
SRP021940_embryo | 0 .00 RPM | 4 .25 RPM |
SRP021940_placental_villous | 0 .00 RPM | 1 .54 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 1 .89 RPM |
SRP021940_testis | 0 .00 RPM | 2 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_1147 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006388 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004215 | 1 retrocopy | |
Equus caballus | ENSECAG00000013072 | 1 retrocopy |
retro_ecab_593 ,
|
Nomascus leucogenys | ENSNLEG00000012892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011077 | 1 retrocopy |