RetrogeneDB ID: | retro_ecab_701 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 29:13710494..13710738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFS6 | ||
Ensembl ID: | ENSECAG00000021690 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7713] |
Percent Identity: | 50.59 % |
Parental protein coverage: | 66.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LLGRGGG-AALSLPGGARCFGVRTSPTGEKVTHTGQAYGAEDYRRIRFVGRQKEVNENFAIDLIAEQPV- |
LLG..G...A.S...G.R..G..TSPTGEK..HT...Y.....R.I...G.Q.EV.E.....L.AEQPV. | |
Retrocopy | LLGQSGR<VAWSPLWGTRRLGL*TSPTGEKIVHTDRVY-VKACRKIPSLGHQREVSETLLLNLTAEQPV< |
Parental | SEVESRVISCDGGGG |
.EVESRV..CDG.GG | |
Retrocopy | NEVESRVMACDGCGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 20 .96 RPM |
SRP021940_cerebellum | 0 .00 RPM | 46 .01 RPM |
SRP021940_embryo | 0 .00 RPM | 35 .75 RPM |
SRP021940_placental_villous | 0 .00 RPM | 28 .19 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 21 .28 RPM |
SRP021940_testis | 0 .83 RPM | 44 .76 RPM |