>retro_ecab_723
GGAAACAAGCAGAAGAAAGTAAAAAACTTTGAAGCTGCCGTTCCTTTCGAAGGCAAAGCCGTTAAGCTGATGGCCAGCGC
CATGTGTTTCTGTAACAGAGCTGCAATTTACAGCCGACTGGGGGACTACAGAGGACGGGGCAGGACTGCGAGCAGCCTTC
TGCACAGACCCGTCCTACAGCCAAAGCTACGGCAGGATGGGCCTGGCGCTTTCCAGTCTGAACAAGCACACCGAGGCCTA
CTAGGAGCAGGAGGCCTTGGAGCTGGATCCCGACAACGACAAGTACAAGTCCCACCTCCACACAGTGAACCGGAGCTGAG
AGAGGCGCGCAGCCCCCGGGAGATGTCCGCAGCTTGGACATCGTGGGCCTGCTGAACAACCCAAGCTTCTTGAGCATGGC
ATCAAACCTAATGAACAATCCCCAATTCGACAGCTCAGGTCCGGCATGATTTTGGGCAGCCACAACCTCCTGGGGACTCC
AGGCACCAGCCCCTTGCAGAACGAGCTCGCCAGTCTCATCCAGGCGGGTCAGCAGTTCGCTCAGCAGATGCAGCAGCAGG
ATCCCGAGTTGATAGAACAGCTCCGAAATCAGATCCGCAGTCGGATCCCCATTGCCAGCGACGACGACCCGCAGGAA
ORF - retro_ecab_723 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.04 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG-AVQDCER-AICIDPSYSKAYGRM |
| GN.Q.KV.NFEAAV.F.GKA..L..A.A..FCNRAA.YS.LG.Y.G...QDCE..A.C.DPSYS..YGRM |
Retrocopy | GNKQKKVKNFEAAVPFEGKAVKLM-ASAMCFCNRAAIYSRLGDYRG<TGQDCEQ<AFCTDPSYSQSYGRM |
|
Parental | GLALSSLNKHTEAVAYYKKALELDPDNEKYKSNLKI-AELKLQE-GTSPTGGVGSFDIAGLLNNPSFMSM |
| GLALSSLNKHTEA......ALELDPDN.KYKS.L....E..L.E.G..P.G.V.S.DI.GLLNNPSF.SM |
Retrocopy | GLALSSLNKHTEAY*E-QEALELDPDNDKYKSHLHT<SEPELRE<GAQPPGDVRSLDIVGLLNNPSFLSM |
|
Parental | ASNLMNNPQ-VQQLMSGMISGGHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSR |
| ASNLMNNPQ...QL.SGMI.G.HN.LGTPGTSP.QN.LASLIQAGQQFAQQMQQQ.PELIEQLR.QIRSR |
Retrocopy | ASNLMNNPQ<IRQLRSGMILGSHNLLGTPGTSPLQNELASLIQAGQQFAQQMQQQDPELIEQLRNQIRSR |
|
Parental | TPSASNDDQQE |
| .P.AS.DD.QE |
Retrocopy | IPIASDDDPQE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
14 .17 RPM |
SRP021940_cerebellum |
0 .10 RPM |
31 .63 RPM |
SRP021940_embryo |
0 .05 RPM |
40 .89 RPM |
SRP021940_placental_villous |
0 .00 RPM |
15 .06 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
16 .39 RPM |
SRP021940_testis |
0 .13 RPM |
53 .65 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_723 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_723 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_723 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.