>retro_ecab_801
TTGATAGCCAACCTTTTTATTAACAGTTTTGGATCCATTCAAGAGACAACAATGGACTGTAGAGTTAACATCTTCCTGAG
ACAAAAATGGAACGATCCCAGGCTGAAGCTCCCTGGAGATTTTCGGGGCTTAGATGCACTGACAGTGGATCCCACAACAT
ACAAGTGTCCGTGGAAACTTAATTAGTTTTTTCCAAATGAAAAAAGTGCCAATTTTTATGATGTAACACAGGAAAACATC
CTCTTTATTTTGGGGGATGGAGATGTCCTCGTCAGCGTGAGGTTATCTATTGTCTTTCACGCCCTTTGAACTTGACTTTG
TTTCCCGTGCACACACAACATTGTAAGACACAATTTAAGAGCTTTGTTTACACAACTGATGATTTACGATTTGTCTGGCA
GTCAGGGGATCCTCTCAGTTAGAAAAAATTGTGCTGCCTCAATTTGATATTAAAAAGGAGGATGTTGAATATGGTGTAAC
TGTACAAAATACTATGAAGGTACTGGCTACTACACACATGTAGAAGTCATCCTCACCCTAAGGAGACAGATAGGGTTTTC
CACGATGGGTGTCTATACCCCAACCCTGCTGATTGTGGTTCTCTCTTGGCTTTCCTTCTGGATCAATCCAGATACCAGTG
CTGCCGGAATGCCCCTGGGTATCTTCTCAGTACTCAGCTTGGCCTCTGAGTGCACAACCCTTGCTGCTGAACTCCCCAAA
GTATCGTACACTAAGGCTCTTGATGAATGACTCGTTGCTTGTCTTCTCTTTGGGTTTGCCTCACTAGTG
ORF - retro_ecab_801 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.94 % |
Parental protein coverage: |
53.12 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | VVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDFRGSDALTVDPTMYKCLWKPDLFFANEKSA |
| ...N.FINSFGSIQETTMD.RVNIFLRQKWNDPRLKLP.DFRG.DALTVDPT.YKC.WK...FF.NEKSA |
Retrocopy | LIANLFINSFGSIQETTMDCRVNIFLRQKWNDPRLKLPGDFRGLDALTVDPTTYKCPWKLN*FFPNEKSA |
|
Parental | NFHDVTQENILLFIFRDGDVLVSMRLSIT-LSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDP |
| NF.DVTQENIL.FI..DGDVLVS.RLSI..LS.PL.LTLFP..TQ.CK.Q..SF.YTTDDLRF.WQSGDP |
Retrocopy | NFYDVTQENIL-FILGDGDVLVSVRLSIV<LSRPLNLTLFPVHTQHCKTQFKSFVYTTDDLRFVWQSGDP |
|
Parental | VQLEKIALPQFDIKKEDIE-YGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFW |
| ....K........K........NCTKYY.GTGYYT.VEVI.TLRRQ.GF..MGVY.PTLLIVVLSWLSFW |
Retrocopy | LS*KKLCCLNLILKRRMLN>WCNCTKYYEGTGYYTHVEVILTLRRQIGFSTMGVYTPTLLIVVLSWLSFW |
|
Parental | INPDASAARVPLGIFSVLSLASECTTLAAELPKVSYVKALDVWLIACLLFGFASLV |
| INPD.SAA..PLGIFSVLSLASECTTLAAELPKVSY.KALD..L.ACLLFGFASLV |
Retrocopy | INPDTSAAGMPLGIFSVLSLASECTTLAAELPKVSYTKALDE*LVACLLFGFASLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
7 .50 RPM |
SRP021940_cerebellum |
0 .00 RPM |
31 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
3 .27 RPM |
SRP021940_placental_villous |
0 .00 RPM |
3 .13 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
3 .84 RPM |
SRP021940_testis |
0 .00 RPM |
1 .02 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_801 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_801 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_801 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.