RetrogeneDB ID: | retro_ecab_879 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:35318962..35319660(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016527 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.4 % |
Parental protein coverage: | 86.03 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | NNLPDKEFKQKVIRMLTDLGRRMDEPSGNFNKELENIKKNQSKNKHRL-KQKTTHQLGKNICKDSIAQER |
NN.PDKE.K.KV.R.LTDLGRR.DE.S.NFN.E.ENIKKNQS..K....K.K.T......I.......E. | |
Retrocopy | NN*PDKEYKLKVTRLLTDLGRRIDELSENFNTEQENIKKNQSELKNTMMKMKNTLE---GISRVGDTEEQ |
Parental | TNKLDKRLEEITQADQIKEKRIKKNEDGLRDLWNNIKHTNIHIIDVPEGEE-RDKGAENLFGEIIAENFP |
.N.LD.R.EEI.QA.Q.KEKRIK.NE..LRDL..NIKHTNI.II..PE.EE.R.KGAENL..EIIAENFP | |
Retrocopy | INDLDERVEEIIQAKQTKEKRIKRNENSLRDLQDNIKHTNICIIVIPE-EE>RKKGAENLSEEIIAENFP |
Parental | NL-RRKYPGEAQRAPNKINPKRPTPRHIIIKMSKSKDKERILNALRERQQVTYKGNPIRLS-ANFSAETL |
NL.RRK..........K....................K.R.L..LRE..Q.T.K.NPIRL..A.FSAETL | |
Retrocopy | NL>RRKQTSRYRKQSTKQDKPKEAQTKTHYN*NVKS*K*RSLKVLREKLQLTNKANPIRLLLADFSAETL |
Parental | ETRREWHDILKVLKGKNLQPRILYSARL |
..RREWHDILKVLKGKNL.PRILY.ARL | |
Retrocopy | QARREWHDILKVLKGKNL*PRILYPARL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .62 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |