>retro_ecab_881
ATGAGGGAAGAAAGCAATATATTCCAAACAGAAAAGCAAGATAAAACTCCAGAAACAGACCTTAATGAAATGGAGATAAG
TGATTTACCCAATAAAGAGTTCAAAATAATGGTCATAAAGATGCCCACCAAGATCAAGAGAATAATGCATGAACAAAATG
AGAATTTCAACAAGAGATAAAAAAAAAATAAGAAAGCACCAAACAGAAATTAGAGATCTGAATACTACAGTAACTGAACT
AAAAAAGTCAATGGAGGGGTTCCACTCCAGACTAGATCAAGCAGAAGAAAATATCAGCAAACTCTAGGACAAGCAGTGGA
ACTCATTCAATGAGAAGAGCAAAACAAAATGAAATGAAAAACAATACTGATAGCTTAAGGAAATTATAGGACACTAACAA
GTGGGCCAATGTTTGCATTATAGGGGTCCCAGAAGGAGAAGACAGAGAGAAAGGGGCAGGAAGCTTATTTAAAGATATAA
TGGCTGAA
ORF - retro_ecab_881 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.05 % |
Parental protein coverage: |
94.71 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MKKQGNMFQMKEQDK-PENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNK-ETDSIRKCQIE |
| M....N.FQ...QDK.PE..LNEME.S.LPNKEF...VIKM.TK.KR.M.E...NFNK......RK.Q.E |
Retrocopy | MREESNIFQTEKQDKTPETDLNEMEISDLPNKEFKIMVIKMPTKIKRIMHEQNENFNK>DXXXXRKHQTE |
|
Parental | VTELKNTIPELTNTLEGFNSRLDEAEERISELNDRAELTQSEQQKEK-RMKNTDNSLRELWDNIKHANIR |
| ...L..T..EL....EGF.SRLD.AEE.IS.L.D.......E..K.K..MKN...SLR.L.D..K.AN.. |
Retrocopy | IRDLNTTVTELKKSMEGFHSRLDQAEENISKL*DKQWNSFNEKSKTK>EMKNNTDSLRKL*DTNKWANVC |
|
Parental | IIGVPEGEERDKGAENLFVEIIQE |
| IIGVPEGE.R.KGA..LF..I..E |
Retrocopy | IIGVPEGEDREKGAGSLFKDIMAE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .05 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_881 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_881 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_881 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
14 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000015686 | 14 retrocopies |
retro_ecab_1030, retro_ecab_1031, retro_ecab_1111, retro_ecab_1127, retro_ecab_207, retro_ecab_208, retro_ecab_326, retro_ecab_487, retro_ecab_491, retro_ecab_518, retro_ecab_607, retro_ecab_625, retro_ecab_863, retro_ecab_881 ,
|