RetrogeneDB ID: | retro_ecab_888 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:72561654..72562426(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016527 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.36 % |
Parental protein coverage: | 95.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | FKQKVIRMLTDLGRRMDEPSGNFNKELENIKKNQSKNKHRLKQKTTHQLGKNICKDSIAQERTNKLDKRL |
.K..VIRM.TD.G.R.D..S.NFNK..ENIKK.QS..K................K.....ER...LD.R. | |
Retrocopy | YKAIVIRMVTDVGKRIDKHSENFNK*FENIKKDQSELKNTIMKNSLERIS---IKVDDTEERNSELDERI |
Parental | EEITQADQIKEKRIKKNEDGLRD-LWNNIKHTNIHIIDVPEGEERDKGAENLFGEIIAENFPNLR-RKYP |
EEITQA.Q.KEKRIKKNED.LRD.LW..IK.TNIHII.VPEG..R.KGA.NLF.EIIAENFP.LR.RK.. | |
Retrocopy | EEITQAEQKKEKRIKKNEDCLRD<LW-DIKCTNIHIISVPEGDDRGKGA*NLFKEIIAENFPDLR>RKQV |
Parental | GEAQRAPNKINPKRPTPRHIIIKMSKSKDKERILNALRERQQVTYKGNPIRLSANFSAETLETRREWHDI |
.EAQR.PNK.NPKRP.PRHI.IK.S..KDKERIL...RERQQVTYK.NPI.LSA.F.AETL...RE...I | |
Retrocopy | QEAQRTPNKMNPKRPIPRHIMIKISRIKDKERILKTPRERQQVTYKENPITLSADFLAETLQVKRE*NNI |
Parental | LKVLKGKNLQPRILYSARLSF-MEG-EIEFPDKQNLEEFITKKPALQEMLNGLI |
.KVLKGKN.Q.R.LY..RLSF..EG...EF.....L.EF.T.K..LQE.L.GLI | |
Retrocopy | FKVLKGKNIQSRMLYLVRLSFRVEG>DKEFSRQAKLQEFLTTKVPLQEILKGLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |