RetrogeneDB ID: | retro_ecab_929 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 7:52143086..52143484(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000018840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.7 % |
Parental protein coverage: | 66.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADF- |
.F..L.K.LE..V.E.NRT.NYINVERPSPRHILVKL.K...KE.I.....RQKKITYK..PIRLS.DF. | |
Retrocopy | HFPKLEKELELHVNEDNRTTNYINVERPSPRHILVKLSKVNDKEKILS-VSRQKKITYKRTPIRLSLDF> |
Parental | SQTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLR-EFITTRPPLQEMMK |
.Q.....REWND..KILK.KN..PRILYPVK.SFRY..EIK.F.DKQKLR..FIT.R.P.....K | |
Retrocopy | QQKTYRLREWNDLLKILKDKNFQPRILYPVKISFRYDGEIKTFPDKQKLR>VFITMRSPIKDLIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000018840 | 28 retrocopies |
retro_ecab_1000, retro_ecab_1011, retro_ecab_1045, retro_ecab_1062, retro_ecab_1076, retro_ecab_221, retro_ecab_243, retro_ecab_296, retro_ecab_322, retro_ecab_327, retro_ecab_424, retro_ecab_482, retro_ecab_498, retro_ecab_523, retro_ecab_545, retro_ecab_564, retro_ecab_571, retro_ecab_663, retro_ecab_718, retro_ecab_742, retro_ecab_763, retro_ecab_787, retro_ecab_790, retro_ecab_824, retro_ecab_902, retro_ecab_908, retro_ecab_928, retro_ecab_929 ,
|