RetrogeneDB ID: | retro_eeur_124 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7689:75734..76220(+) | ||
Located in intron of: | ENSEEUG00000007465 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSMCE4A | ||
Ensembl ID: | ENSEEUG00000014906 | ||
Aliases: | None | ||
Description: | non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935] |
Percent Identity: | 61.73 % |
Parental protein coverage: | 56.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TFHFLLGSVQGEAPIPKPRTDRPRRVAAPEEQRAMPAQLKRMEES-HQEATEKEVERILGLLQTYFREDP |
TFHF...SV......PK.R....R.....EE...MP..L.RM.....QEATEKEVERILGLLQTYFR..P | |
Retrocopy | TFHFMFSSVKTDSSAPKRRVEYRRKAPKMEESGDMPTKLRRMDLTCNQEATEKEVERILGLLQTYFRKYP |
Parental | DTPMSFFDFVIDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPIIEPININEASLVMDQNTQMRIQGI |
DTP.S.F.FVIDP.SF.RTVENIF.VSFIIRDGFARIRLDQDRLPI.EPI.I.......D.....R.QGI | |
Retrocopy | DTPVSYFEFVIDPTSFSRTVENIFYVSFIIRDGFARIRLDQDRLPILEPIDIDQMGEGSDFSFHSRKQGI |
Parental | IALISRDWEDIVKTFEISEPVI |
I.L...DW..IV.TFEISE..I | |
Retrocopy | ISLSLQDWKNIVATFEISEAMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 16 .28 RPM | 11 .44 RPM |
SRP017611_kidney | 2 .81 RPM | 28 .51 RPM |
SRP017611_liver | 0 .00 RPM | 16 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010897 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019166 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012419 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003695 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003880 | 1 retrocopy | |
Equus caballus | ENSECAG00000016651 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014906 | 1 retrocopy |
retro_eeur_124 ,
|
Felis catus | ENSFCAG00000003647 | 1 retrocopy | |
Homo sapiens | ENSG00000107672 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012044 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002960 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010026 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002712 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017186 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020452 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011112 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006534 | 1 retrocopy |