RetrogeneDB ID: | retro_eeur_15 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_371041:4698..6252(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000015299 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALDH1A2 | ||
Ensembl ID: | ENSEEUG00000012262 | ||
Aliases: | None | ||
Description: | aldehyde dehydrogenase 1 family, member A2 [Source:HGNC Symbol;Acc:15472] |
Percent Identity: | 67.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKL |
.FINNEW....S...FP..NP.TG.....V.E.D.AD.D.AV.AAR.AF.LGS.WRRMDASERGRLL..L | |
Retrocopy | LFINNEWRDAVSKKTFPTVNPSTGDVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRL |
Parental | ADLVERDRAILATMESLNGGKPFLQAFYVDLQGVIKTLRYHAGWADKIHGMTIPVDGDYFTFTRHEPVGV |
ADLVERDR..LA..E.L..GKPF......DL..VIK..RY.AGWADK.HG.TIP.DG..F.FTRHEPVGV | |
Retrocopy | ADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGV |
Parental | CGQIIPWNFPLLMFAWKIAPALCCGNTIVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAA |
CGQIIPWNFPL.M..WK.APAL..GNT.V.K.AEQTPLSALY...LIKEAGFPPGV.NI..GYGPTAGAA | |
Retrocopy | CGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAA |
Parental | IASHVGIDKIAFTGSTEVGKLVQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQC |
IA.H..IDK.AFTGSTEVG.L.Q.AAG.SNLKRVTLELGGKSP.I..ADAD.D.AVEQ.H...FFN.GQC | |
Retrocopy | IAQHMDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQC |
Parental | CTAGSRIFVEESIYEEFVRRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGG |
C.AGSR.FVEESIY.EF..R.VE.A..R.VG.PF...T.QGPQ.DK.Q...IL..I..G..EGA.L.CGG | |
Retrocopy | CCAGSRTFVEESIYDEFLERTVEKARQRKVGNPFELDTQQGPQVDKEQFERILGYIRLGQKEGAMLLCGG |
Parental | KGLGCKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALT |
...G..GFFI.PTVF..V.DDMRIA.EEIFGPVQ....FK...EVIERANN...GL.AAVFT.D..KAL. | |
Retrocopy | ERFGERGFFIKPTVFGGVQDDMRIAREEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDKALY |
Parental | VSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGRE |
...A.QAGTVW.N.YN......PFGGFK.SGNGRE | |
Retrocopy | FTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 10 .47 RPM |
SRP017611_kidney | 112 .71 RPM | 5 .06 RPM |
SRP017611_liver | 36 .17 RPM | 0 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006418 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012262 | 1 retrocopy |
retro_eeur_15 ,
|
Monodelphis domestica | ENSMODG00000008641 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007113 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012720 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012217 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004549 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002361 | 1 retrocopy |