RetrogeneDB ID: | retro_eeur_16 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7890:11211..11673(-) | ||
Located in intron of: | ENSEEUG00000003960 | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003978 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000015224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNVGVAHSEV-PNTRVMNSRGIWLAYVILVGLLHVILLSIPFISIPVVWTLTNVIHNLAMYVFLHTVKGT |
MNVGVAHSEV.PNTRVMNSRGIWLAYVILVGLLH.ILLSI.FISIPVVWTLTNVIHNLAMYVFLHTVKGT | |
Retrocopy | MNVGVAHSEVNPNTRVMNSRGIWLAYVILVGLLHMILLSISFISIPVVWTLTNVIHNLAMYVFLHTVKGT |
Parental | PFETPDQGKSRLLTHWEQMDYGLQFTSSRKFLSISPIVLYILASFYTKYDAAHFFINTASLLSVLLPKLP |
PFETPDQGKSRLLTHWEQMDYG.QFTSSRKFLSI.PIVLYILASFYTKY.AAHFFINTASLLSVLLPKLP | |
Retrocopy | PFETPDQGKSRLLTHWEQMDYGIQFTSSRKFLSIFPIVLYILASFYTKYNAAHFFINTASLLSVLLPKLP |
Parental | QFHGVRVFGINKY |
QFHGVRVFGINKY | |
Retrocopy | QFHGVRVFGINKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 1 .93 RPM |
SRP017611_kidney | 0 .75 RPM | 6 .19 RPM |
SRP017611_liver | 0 .32 RPM | 5 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003047 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000071 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009601 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015224 | 1 retrocopy |
retro_eeur_16 ,
|
Felis catus | ENSFCAG00000013964 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014896 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010920 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003575 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006292 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000911 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025353 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001695 | 2 retrocopies |