RetrogeneDB ID: | retro_eeur_169 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_13904:2086..2427(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSEEUG00000010390 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRT-PGNRIVYLYTKKVGKAPKSACGVCP-GRLRGVRAVRPKVLKRLS |
MVQRLTYR.RLSYNTAS.KTRLS.T.PGNRIVYLYTKKVGKAPKS.CGVC..G..R.VR...PKV.KRL. | |
Retrocopy | MVQRLTYRSRLSYNTASSKTRLSCT<PGNRIVYLYTKKVGKAPKSVCGVCV>GGVRAVR---PKVHKRLW |
Parental | KTKKHVSRAYGGS-MCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
KTKKHVSRAYGGS...AKC.RDRIKRAFLIEEQKIVVKVLKAQAQSQK.K | |
Retrocopy | KTKKHVSRAYGGS<QWAKCDRDRIKRAFLIEEQKIVVKVLKAQAQSQKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .64 RPM | 48 .50 RPM |
SRP017611_kidney | 1 .50 RPM | 125 .84 RPM |
SRP017611_liver | 0 .96 RPM | 88 .27 RPM |