RetrogeneDB ID: | retro_eeur_181 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_179717:24..345(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB1 | ||
Ensembl ID: | ENSEEUG00000005157 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) [Source:HGNC Symbol;Acc:11617] |
Percent Identity: | 96.26 % |
Parental protein coverage: | 98.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DKTYGGCEGPDAMYVKLISSNGHEFIVKREHALTSGTITAMLSGPXQFAENETNEVNFREIPSHVLSKVC |
.KTYGGCEGPDAMYVKLISS.GHEFIVKREHALTSGTI.AMLSGP.QFAENETNEVNFREIPSHVLSKVC | |
Retrocopy | EKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC |
Parental | MYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD |
MYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD | |
Retrocopy | MYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 19 .50 RPM | 2 .42 RPM |
SRP017611_kidney | 28 .13 RPM | 2 .06 RPM |
SRP017611_liver | 10 .93 RPM | 1 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000005157 | 3 retrocopies |
retro_eeur_181 , retro_eeur_271, retro_eeur_556,
|
Macropus eugenii | ENSMEUG00000015988 | 11 retrocopies |