RetrogeneDB ID: | retro_eeur_192 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_203441:1557..1995(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000006282 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC2 | ||
Ensembl ID: | ENSEEUG00000008623 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] |
Percent Identity: | 71.23 % |
Parental protein coverage: | 56.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CHVTMCIPPSYADLGKAARDIFNKGFXXXXXXXXXXXXXXXXXEFSTSGSSNTDTGKVTGTLETKYKWCE |
C....C.PP.YADLGKAARDIFNK.F.........XXX......FS..GSSNTDTG.VTGTLETK.KWCE | |
Retrocopy | CQRPVCTPPAYADLGKAARDIFNKRFGFGLVKLDVXXXSCHGVGFSRPGSSNTDTGNVTGTLETKDKWCE |
Parental | YGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGP |
Y.LTFT..WNTDNTLGTE.A.EDQIC.GLKLTFDTT.S.N.GK..GK.KSS.KRECINLGCDVDF.FAGP | |
Retrocopy | YILTFTDQWNTDNTLGTETATEDQICHGLKLTFDTTSSLNMGKERGKSKSSHKRECINLGCDVDFHFAGP |
Parental | AIHGSA |
AI.GS. | |
Retrocopy | AIQGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 150 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 322 .38 RPM |
SRP017611_liver | 0 .00 RPM | 92 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000008623 | 2 retrocopies |
retro_eeur_192 , retro_eeur_343,
|
Nomascus leucogenys | ENSNLEG00000016857 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013505 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001946 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008068 | 1 retrocopy |