RetrogeneDB ID: | retro_eeur_23 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_213937:4462..5629(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000009813 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000008602 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.17 % |
Parental protein coverage: | 89.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSILKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSQAVEHIN |
MS.LKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALEL.DNDKT.YMGKGVSQAVEHIN | |
Retrocopy | MSVLKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALELWDNDKTGYMGKGVSQAVEHIN |
Parental | NTIAPALVSKKLNVVEQEKIDKLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGN |
NTIAPALVSKKLNVVEQEKIDKL.IEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLY.H.ADLAGN | |
Retrocopy | NTIAPALVSKKLNVVEQEKIDKLLIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYHHVADLAGN |
Parental | PEVILPVPAFNVINGGSHAGNKLAMQEFMILPAGAANFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDE |
PEVILPVPAF.VINGGSHAGNKLAMQEFMILPAGAANFKEAMR.GAEVYHNLKNVIKEKYGKDATNVGDE | |
Retrocopy | PEVILPVPAFSVINGGSHAGNKLAMQEFMILPAGAANFKEAMRTGAEVYHNLKNVIKEKYGKDATNVGDE |
Parental | GGFAPNILENKEALELLKNAIAKAGYADKVVIGMDVAASEFFRSGKYDLDFKSPDDPSRYISASELGNLY |
GGFAPNILENKEALELLKNAIAKAGY..KVVIGMDVAASEFFRSGKYDLDFKSPDDPSRYISASELGNLY | |
Retrocopy | GGFAPNILENKEALELLKNAIAKAGYTYKVVIGMDVAASEFFRSGKYDLDFKSPDDPSRYISASELGNLY |
Parental | KSFISDYPVVSIEDPFDQDDWEAWRDFTATAGIQVVGDDLTVTNPKRIAKAVEEKSCNCLLLKVNQIGSV |
KSFISDYPVVSIEDPFDQDDWEAWRDFTATAGIQVVGDDLTVTNPKRIAKA.EEKSCNCLLLKVNQIGSV | |
Retrocopy | KSFISDYPVVSIEDPFDQDDWEAWRDFTATAGIQVVGDDLTVTNPKRIAKAIEEKSCNCLLLKVNQIGSV |
Parental | TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLC |
TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLC | |
Retrocopy | TESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 52 .37 RPM | 335 .99 RPM |
SRP017611_kidney | 79 .52 RPM | 489 .29 RPM |
SRP017611_liver | 52 .57 RPM | 307 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies |
retro_eeur_23 , retro_eeur_243,
|
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |