RetrogeneDB ID: | retro_eeur_271 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_232553:4595..4870(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB1 | ||
Ensembl ID: | ENSEEUG00000005157 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) [Source:HGNC Symbol;Acc:11617] |
Percent Identity: | 59.14 % |
Parental protein coverage: | 84.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LISSNGHEFIVKREHALTSGTITAMLSGPXQFAE-NETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTE |
.ISS.G......................P......NETNEVNFREIPSHVLSKVC.YFTYKV.YTNSST. | |
Retrocopy | VISSDGY*IYCEKRTCINIRNYKSHIKWPRSVTK<NETNEVNFREIPSHVLSKVCVYFTYKVHYTNSSTK |
Parental | IPEFPIAPEIALELLMAANFLDC |
..E.PIAPEIALELL.A.NFLDC | |
Retrocopy | MLECPIAPEIALELLIATNFLDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .06 RPM |
SRP017611_liver | 0 .16 RPM | 1 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000005157 | 3 retrocopies |
retro_eeur_181, retro_eeur_271 , retro_eeur_556,
|
Macropus eugenii | ENSMEUG00000015988 | 11 retrocopies |