RetrogeneDB ID: | retro_eeur_286 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_240161:4690..4969(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000002271 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSEEUG00000006818 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | LTTQWGKHTRNLHKTVVQNGAGEALFVHRDTPENNPDTPFDFTPENYKRIEAIVNNYPEGHKASAILPVL |
LT..W.KH.RNL.KT.VQN..G.ALFVHRD.PENN.DT..DFTPEN..R..AIVNN.PE.HKASA.L.VL | |
Retrocopy | LTS*WRKHIRNLYKTAVQNRTGGALFVHRDSPENNQDTLLDFTPENC*RRKAIVNNCPEEHKASALLLVL |
Parental | DLAQRQNGWLPISAMNKVAEVLE |
.LA..Q.G..P.S.M.KVAEVL. | |
Retrocopy | ELA*SQSG*FPVSTMKKVAEVLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 107 .27 RPM |
SRP017611_liver | 0 .00 RPM | 87 .46 RPM |