RetrogeneDB ID: | retro_eeur_312 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_250644:13513..13960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB | ||
Ensembl ID: | ENSEEUG00000015568 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153] |
Percent Identity: | 92.62 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV |
MTVGKS.KMLQH.DYRMRCILQDG.IFIGTFKAFDKHMNLIL.DCDEFRKIKPKNSKQAEREEKRVLGLV | |
Retrocopy | MTVGKSGKMLQHTDYRMRCILQDGHIFIGTFKAFDKHMNLILYDCDEFRKIKPKNSKQAEREEKRVLGLV |
Parental | LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ |
LLRGE.L.SMT.EGPPPKDTGIARVPLAGAAGGPGI.RAAGRGIPAGVPMPQAPAGLAGPV.G.GG.SQQ | |
Retrocopy | LLRGESLGSMTAEGPPPKDTGIARVPLAGAAGGPGICRAAGRGIPAGVPMPQAPAGLAGPVGGIGGLSQQ |
Parental | VMTPQGRGT |
VMTPQGRGT | |
Retrocopy | VMTPQGRGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 19 .82 RPM |
SRP017611_kidney | 0 .56 RPM | 47 .63 RPM |
SRP017611_liver | 0 .00 RPM | 14 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011353 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006693 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020971 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007896 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015568 | 3 retrocopies |
retro_eeur_312 , retro_eeur_434, retro_eeur_6,
|
Felis catus | ENSFCAG00000014447 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016519 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016951 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009283 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009206 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016149 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007459 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010841 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010040 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014498 | 2 retrocopies |