RetrogeneDB ID: | retro_eeur_327 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_255345:3957..4359(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000014484 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSEEUG00000010052 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 71.85 % |
Parental protein coverage: | 72.28 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE |
MLE...TAG.EQF.A.R.LY.K.GQGF.LVY.ITAQSTFNDL..LR..IL.VKDT..V...LV.NKCDL. | |
Retrocopy | MLEVFLTAGMEQFVAKRNLYLKSGQGFTLVYAITAQSTFNDL*GLRDHIL-VKDTNGVSVMLVSNKCDLG |
Parental | DERVVGKEQGQNLARQWNNCAFLESSAKSK--INVNEIFYDLVRQINRKTPVPGKARKKSSCQLL |
DERVVGKEQ.QNLARQ...CAFLESSAK....INVNEIFY.LV.Q.NRK.PVP.KA.KK.SCQLL | |
Retrocopy | DERVVGKEQSQNLARQ*SSCAFLESSAKINK*INVNEIFYNLV*QSNRKIPVPEKACKKLSCQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .14 RPM |
SRP017611_liver | 0 .00 RPM | 30 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Erinaceus europaeus | ENSEEUG00000003058 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010052 | 1 retrocopy |
retro_eeur_327 ,
|
Erinaceus europaeus | ENSEEUG00000010446 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011442 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029552 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005197 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000007048 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies |