RetrogeneDB ID: | retro_eeur_329 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_25622:52..892(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003341 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000014870 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.79 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GTACDLTGQLFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQ |
GTAC.L.GQ.FDT.KVKMQTFP..Y.GLTDCC..TYSQVGFRGFY.GT.PAL.A..AENSVLFMC.GFCQ | |
Retrocopy | GTACVLIGQPFDTVKVKMQTFPYMYKGLTDCCRQTYSQVGFRGFYRGTGPALMAYVAENSVLFMCFGFCQ |
Parental | QVVRKVIGLDSQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMESSGKIARSQNTVWSVVKS |
Q.V.KV.GL....KL.DLQ.AAAGS.ASAFAALVLCPTELVKCRLQTMYEME.SGKI...QNTVWSVV.. | |
Retrocopy | QFVKKVVGLRKHEKLNDLQTAAAGSLASAFAALVLCPTELVKCRLQTMYEMEMSGKITKRQNTVWSVVNA |
Parental | ILSKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGVGGICLWLAVYP |
IL.KDG.LGFYHGLS.TLL.EVPGYFFFFGGYE.SRS.FASGRSKD.L.P..LM.SGG..GIC.W..VYP | |
Retrocopy | ILRKDGLLGFYHGLSGTLLQEVPGYFFFFGGYEVSRSIFASGRSKDDLSPAHLMISGGIAGICHWVVVYP |
Parental | VDCIKSRIQVLSMSGKQAGFI-TFISVLKNEGVTALYSGLKPTMIRAFPANGALFLAYEYSRKLMMGQFE |
VDCIKSRIQVLSMSGKQAGF..T.....KNEGV..LYSGLK.T.IRA.PANG.LF..YEYSRK.MM..FE | |
Retrocopy | VDCIKSRIQVLSMSGKQAGFARTLRNTVKNEGVAVLYSGLKVTLIRAVPANGSLFIVYEYSRKMMMSRFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .42 RPM | 6 .28 RPM |
SRP017611_kidney | 0 .56 RPM | 3 .38 RPM |
SRP017611_liver | 0 .16 RPM | 147 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011723 | 1 retrocopy | |
Bos taurus | ENSBTAG00000011647 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005955 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004899 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014870 | 1 retrocopy |
retro_eeur_329 ,
|
Mus musculus | ENSMUSG00000031482 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016684 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000014616 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011881 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002472 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009373 | 1 retrocopy |