>retro_eeur_363
AAGGTACCCAAAACCCCCGGGTACAGTTCACAAGGTACAGACAATTAGAGTGATTCACACGACCCTGTGACAGAGTGATG
ATGGTGGCTTCAGTGAAGAGTGGGAAGCCCAGAGGGATAGCCACCTGGGGCCTCAGCGTTCCACCTTGGAGTCACAAGCT
GCTGTCCAGGAACTTTCCAGCAGCATCCTTGCCAATAAGGACCAGAGGAAAGGGAAGTAAAACCTGGATTAGGATATTTC
ATTTTCTACAGTGTTCTGGTTGGTAAAGCTTCTGCAATGGCCAGTGGTGACTGGAACACAACCATTGCCTGTTTTGTAGC
CATATTAATTGGTTTGTGCCTTACATTATCACTCCTCACCACTTTCAAGAAAGCATAGCCGGCTCTTCCAATCCCTATCG
CCTTTGGGCTTAATTTCTACTTTGCCACAGATTATCTTGTACAGCCCTTTATGGACCTATTAGAATTCCATCAATAT
ORF - retro_eeur_363 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.1 % |
Parental protein coverage: |
51.47 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KASKTPRYSSQGTDN--DSRDPVTE-SDDGGFSEEWEAQRDSRLGPQRSTSESRAAVQELSSSILASED- |
| K..KTP.YSSQGTDN..DS.DPVTE..D.G.FSEEWEAQRDS.LGPQRST.ES.AAVQELSSSILA..D. |
Retrocopy | KVPKTPGYSSQGTDN*SDSHDPVTE>DDGG-FSEEWEAQRDSHLGPQRSTLESQAAVQELSSSILANKD< |
|
Parental | PEERGVKLGLGDFIFYSVLVGKASAMASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFGL |
| PEER.VK.GLG.FIFYSVLVGKASAMASGDWNTTIACFVAILIGLCLTL.LL..FKKA.PALPI.I.FGL |
Retrocopy | PEEREVKPGLGYFIFYSVLVGKASAMASGDWNTTIACFVAILIGLCLTLSLLTTFKKA*PALPIPIAFGL |
|
Parental | IFYFATDYLVQPFMDQLAFHQF |
| .FYFATDYLVQPFMD.L.FHQ. |
Retrocopy | NFYFATDYLVQPFMDLLEFHQY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
20 .30 RPM |
SRP017611_kidney |
0 .00 RPM |
46 .51 RPM |
SRP017611_liver |
0 .16 RPM |
20 .58 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_363 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.