RetrogeneDB ID: | retro_eeur_404 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_285997:1623..1913(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO1 | ||
Ensembl ID: | ENSEEUG00000013161 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 96.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE-GQRI |
DQEA..S.EDL.D.KEGEYIKLKVIGQ.SSEI.FK.KMT.HLK..KESYCQ..GVP..SL..LF..GQRI | |
Retrocopy | DQEANLSAEDLRD*KEGEYIKLKVIGQQSSEIYFKLKMTLHLK*IKESYCQS*GVPVDSLQLLFK<GQRI |
Parental | ADNHTPKELGMEEEDVIEVYQEQTGGHS |
...HTPKE.GME..DVIEVYQE.TG..S | |
Retrocopy | SNIHTPKEKGMEKKDVIEVYQEHTGWNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .07 RPM |
SRP017611_liver | 0 .00 RPM | 14 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009859 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000012431 | 8 retrocopies | |
Equus caballus | ENSECAG00000024693 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013161 | 6 retrocopies | |
Felis catus | ENSFCAG00000031005 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000007504 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000000335 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030345 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013083 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012817 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008205 | 8 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011968 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000642 | 4 retrocopies |