RetrogeneDB ID: | retro_eeur_412 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_291065:10479..10858(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000010114 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC11A | ||
Ensembl ID: | ENSEEUG00000015328 | ||
Aliases: | None | ||
Description: | SEC11 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:17718] |
Percent Identity: | 82.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QLYYQVLNFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN-RVEDPIRVGEIVVF |
QLYYQV..F.MIVSSALMIWKGL.V.TGSESPIVVVLSGSMEPAFHRGDLLFLTN...EDPIR.G.IV.F | |
Retrocopy | QLYYQVFSFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTN>SGEDPIRDGKIV-F |
Parental | RIEGREIPIVHRVLKIHEKQNGNIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRAR |
..EGR.IPIVHRV.K.HEK.N..IKFLTKGDNN.VDDRGLYK.GQ.WLEKKD.VGRAR | |
Retrocopy | KVEGRDIPIVHRVIKVHEKDNSDIKFLTKGDNNKVDDRGLYKEGQNWLEKKDMVGRAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 11 .60 RPM | 7 .73 RPM |
SRP017611_kidney | 12 .94 RPM | 25 .32 RPM |
SRP017611_liver | 14 .15 RPM | 13 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000015328 | 2 retrocopies |
retro_eeur_314, retro_eeur_412 ,
|
Macaca mulatta | ENSMMUG00000011486 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019364 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008205 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007281 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019948 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012320 | 3 retrocopies |