RetrogeneDB ID: | retro_eeur_42 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2520:9069..9452(-) | ||
Located in intron of: | ENSEEUG00000003530 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBP1 | ||
Ensembl ID: | ENSEEUG00000005367 | ||
Aliases: | None | ||
Description: | retinol binding protein 1, cellular [Source:HGNC Symbol;Acc:9919] |
Percent Identity: | 83.72 % |
Parental protein coverage: | 94.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPVDFSGYW-KMQSNDNFEEYLRALDVNVALRKIASLLKPDKEIVQEGEHMIIRTLSTFRNYIMDFQVGQ |
MPVDFSGYW...QSNDNFE.YL.ALDVNV.LRKIASLLK.DKEI.QEGEH.II..LSTFRNYIMDFQ.GQ | |
Retrocopy | MPVDFSGYW<ELQSNDNFE*YLQALDVNVGLRKIASLLKQDKEIMQEGEHIIIHRLSTFRNYIMDFQLGQ |
Parental | EFEEDLTGIDDRKCMTTVSWDGDKLECVQKGEKEGRGWTQWIEGDELHLEMRAQGVICK |
.FEEDLTGIDD.KCMT.VSWDG.KLECVQKGEKEGRGWTQW..GDE.HLEM.AQGV.CK | |
Retrocopy | QFEEDLTGIDD*KCMTIVSWDGNKLECVQKGEKEGRGWTQWNAGDEMHLEMQAQGVACK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 11 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .94 RPM |
SRP017611_liver | 0 .00 RPM | 8 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020028 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005367 | 1 retrocopy |
retro_eeur_42 ,
|
Erinaceus europaeus | ENSEEUG00000014023 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003195 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005673 | 1 retrocopy |