RetrogeneDB ID: | retro_eeur_426 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_295807:4126..4753(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSEEUG00000008944 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 71.36 % |
Parental protein coverage: | 77.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KAPPILPLPTTLPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQSVSEIPETTRMRPRP |
K..P.LP.PTTLPP.NEVHRDTL.NW..QC..S.DGQK.A.Y.RLQK.AF..S.QS.SE.PE.TR.RPRP | |
Retrocopy | KGSPALPWPTTLPPVNEVHRDTLPNWSRQCEWSADGQKRAAYRRLQKQAFSESDQSISEMPEKTRLRPRP |
Parental | RSRKHTT-EDKKARIRKSCQMNEKKRDTSNIVEVTSTAQEAMLAAWGRITARA-SQPKATLSHPVPSSVE |
RS.KHTT.E.KKARI.KSCQMNE..R..S...EVT.TAQ.AMLAAWG...ARA...PKAT.SHPVPS..E | |
Retrocopy | RSKKHTT<EAKKARIHKSCQMNENERESSSEAEVTATAQQAMLAAWGGAAARA<HEPKATHSHPVPSAAE |
Parental | TFLPQATGIRWCIVHGRPLSADTEGWVRLQ-FHVGQVWVPNTPRRMIPLFLLPACTFSTPDLEDNLLCPE |
TFLP.ATG...C.V.GRPLSA...GWVRLQ...VGQVWVP.TPRR.IPL.L.PACTFS.PDLEDNLLCPE | |
Retrocopy | TFLPHATGLGGCAVRGRPLSAHSQGWVRLQ<VRVGQVWVPDTPRRTIPLSLPPACTFSPPDLEDNLLCPE |
Parental | CVK |
CVK | |
Retrocopy | CVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 0 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .56 RPM |
SRP017611_liver | 0 .00 RPM | 0 .32 RPM |