RetrogeneDB ID: | retro_eeur_488 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_324394:5870..6980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSEEUG00000014661 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 82.98 % |
Parental protein coverage: | 91.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KVKKFPKDDPSKPVHLTA-FLGYXXXXXXXXXXXXXXXXXVNKKEVVEAVTIVETPPMVVVGIVGYVETP |
.VK.FPKDD.SKPVHLTA..LGY.................VNKKEVVEAVTI.ETPPMVVVGIVGYVETP | |
Retrocopy | QVKSFPKDDSSKPVHLTA<LLGYKAEMTHIVRDVDRPGSKVNKKEVVEAVTIMETPPMVVVGIVGYVETP |
Parental | RGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHT |
RGL..FKTIF.EHISDECK..FYKNWHKSKKKAFTKYCKKWQDEDGK.QLEKDFSSMKKYCQVI.VIAHT | |
Retrocopy | RGLPTFKTIFVEHISDECKQCFYKNWHKSKKKAFTKYCKKWQDEDGKRQLEKDFSSMKKYCQVIHVIAHT |
Parental | QMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMI-DVIGVTKGKGYKGVTSRW |
QM.LL.L..KKA.LMEIQVNGGTVAEKLDWA.E.LEQQV.VNQVFGQDEM..D..GVTKGKG.KGVTS.W | |
Retrocopy | QMCLLSLQWKKAYLMEIQVNGGTVAEKLDWAPEWLEQQVSVNQVFGQDEMM<DI-GVTKGKGCKGVTSHW |
Parental | HTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNAST |
HTKKLP.KTHRGL.KVACIGAW.PARV.FSVARAGQKGY.H.TEINKKIYKIGQGYLIKDGKLIKNNAST | |
Retrocopy | HTKKLPHKTHRGLHKVACIGAWRPARVVFSVARAGQKGYQHHTEINKKIYKIGQGYLIKDGKLIKNNAST |
Parental | DYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLR--KSLLVQTKRRAL-EKIDLKFIDTTS |
.YDLSDKSINPLG.FVHYGEVTNDFVMLKGCVVGTKKRVL.L...KSLLVQTK.RAL.EKIDLKF.DTTS | |
Retrocopy | YYDLSDKSINPLGRFVHYGEVTNDFVMLKGCVVGTKKRVLPLPLWKSLLVQTKCRAL>EKIDLKFTDTTS |
Parental | KFG-HGRFQTVEEKKAFMGPLKKDRI |
KFG.H.RFQTV.EKKAFM.PLKKD.I | |
Retrocopy | KFG>HCRFQTV-EKKAFMEPLKKDCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .67 RPM | 353 .23 RPM |
SRP017611_kidney | 21 .94 RPM | 936 .38 RPM |
SRP017611_liver | 16 .08 RPM | 581 .20 RPM |