RetrogeneDB ID: | retro_eeur_5 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_343964:572..986(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000014302 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000003783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.09 % |
Parental protein coverage: | 57.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV |
ASEELLKQ.YIDLKD.PFFPGLVKYMNSGPVVAMVWEG.NVVKTGRVM.GETNPADS.PGTI.GD..IQV | |
Retrocopy | ASEELLKQDYIDLKDPPFFPGLVKYMNSGPVVAMVWEGQNVVKTGRVMHGETNPADSMPGTIQGDVYIQV |
Parental | GRNIIHGSDSVKSAEKEISLWFKPEELLNYKSCAFDWIYE |
GRNIIHGSDSVKSAEKEISL.FKPEEL..YKSCAFD.IYE | |
Retrocopy | GRNIIHGSDSVKSAEKEISLLFKPEELVTYKSCAFDGIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .63 RPM |
SRP017611_liver | 0 .00 RPM | 8 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008022 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000018395 | 5 retrocopies | |
Equus caballus | ENSECAG00000021658 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003783 | 2 retrocopies |
retro_eeur_156, retro_eeur_5 ,
|
Felis catus | ENSFCAG00000006742 | 5 retrocopies | |
Homo sapiens | ENSG00000011052 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007784 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016929 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000001940 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012580 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015573 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020857 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024946 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025331 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000002671 | 8 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014470 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000013053 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000007433 | 1 retrocopy |