RetrogeneDB ID: | retro_eeur_501 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_328670:15310..15533(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS21 | ||
Ensembl ID: | ENSEEUG00000004573 | ||
Aliases: | None | ||
Description: | ribosomal protein S21 [Source:HGNC Symbol;Acc:10409] |
Percent Identity: | 76. % |
Parental protein coverage: | 78.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNAG-RSTR-PAGSTASIGPTRSVGPSARWASRTTPFY |
QNDAG.....YVPR.CS.SNRIIGAKDHASIQMN...RSTR.PAGS.ASI.PTRS.GPSA.W.SR..PFY | |
Retrocopy | QNDAGGPWTVYVPRMCSGSNRIIGAKDHASIQMNVA>RSTR*PAGSMASIQPTRSAGPSAGWVSRRNPFY |
Parental | DWPRW |
DWPRW | |
Retrocopy | DWPRW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .63 RPM |
SRP017611_liver | 0 .00 RPM | 32 .96 RPM |