RetrogeneDB ID: | retro_eeur_522 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_336500:9039..9528(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000014286 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.33 % |
Parental protein coverage: | 62.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYFITFEDVRDAEDALH |
MSRYLRP.NTSLF.RNV.DDTRSEDLRREFGRYG.IVDVYVPLDFYTRR.RGFAY...FE.VRDAEDALH | |
Retrocopy | MSRYLRPHNTSLFLRNVVDDTRSEDLRREFGRYGLIVDVYVPLDFYTRR-RGFAY-VQFESVRDAEDALH |
Parental | NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDEYDRYRRSRSRSYERRRSRSRSFDYNYR |
NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE.RNVYSSSRYDEYDRYRRSRSRSYE.RRSRSRSFDYNYR | |
Retrocopy | NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEERNVYSSSRYDEYDRYRRSRSRSYEKRRSRSRSFDYNYR |
Parental | RSYSPRNSRPTGRPRRSRSHSDNDR |
RSYSPRNSRPTGRPRRSRSHSDNDR | |
Retrocopy | RSYSPRNSRPTGRPRRSRSHSDNDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .67 RPM | 17 .73 RPM |
SRP017611_kidney | 9 .00 RPM | 21 .75 RPM |
SRP017611_liver | 4 .18 RPM | 9 .32 RPM |