RetrogeneDB ID: | retro_eeur_566 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_345904:84664..84930(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000014658 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.38 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FHWQATIMGPNDSPYQGGVFFL-TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI |
F.W..TI......P.....FF..TIHFPT.YP.K.P.V.FTT.IYHPN.NS.G.I...ILRSQW.P..TI | |
Retrocopy | FNWHVTIT----APDRRSIFFQ<TIHFPTYYPHKLPEVKFTTKIYHPNGNSSGDI*FGILRSQWIPVSTI |
Parental | SKVLLSICSLLCDPNPDD--PLVP |
SKV.LS.C..L...NPDD..PL.P | |
Retrocopy | SKVILSACA*LYYLNPDDFSPLPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .51 RPM |
SRP017611_liver | 0 .00 RPM | 21 .54 RPM |