RetrogeneDB ID: | retro_eeur_575 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_347078:40896..41716(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1G | ||
Ensembl ID: | ENSEEUG00000001231 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
Percent Identity: | 87.36 % |
Parental protein coverage: | 77.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ADITVVCTLL-LYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKKFAESQPKKD |
ADITVVCTLL.LYKQVLEPS.RQAFPNTNRWFLTCINQPQF.A.LG.VKLCEKM.QF.AKKF.ESQPKKD | |
Retrocopy | ADITVVCTLLWLYKQVLEPSLRQAFPNTNRWFLTCINQPQFWAVLGGVKLCEKMSQFEAKKFSESQPKKD |
Parental | TPRKEKGSREEKQKPQAER-KEEKKAAAAPPPEEEMDECEQALAAEPKAKDPFAHLPKSTFVMDEFKRKY |
TPRKEKGSREEKQKPQAER.K..K....A..P.......EQ.LA.EPKAKDPFAHLPKSTFVMDEFK.KY | |
Retrocopy | TPRKEKGSREEKQKPQAER>KKRKRPLLALLPRRRR---EQELAVEPKAKDPFAHLPKSTFVMDEFKHKY |
Parental | SNEDTLTVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVVLFGTNN |
SNEDTLTVALPYFWEHF.KDGWSLWYSEYRFPEELTQTFMSC.LITGMFQRLDKLRKNAFA.VVLFGTNN | |
Retrocopy | SNEDTLTVALPYFWEHFNKDGWSLWYSEYRFPEELTQTFMSCKLITGMFQRLDKLRKNAFANVVLFGTNN |
Parental | SSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGK |
SSSISGIWVFRGQELAFP.S.DWQVDYESYTWRKLDPGSEETQ.LVREYFSWEGAFQHVGKA..QGK | |
Retrocopy | SSSISGIWVFRGQELAFPVSRDWQVDYESYTWRKLDPGSEETQMLVREYFSWEGAFQHVGKAVSQGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .64 RPM | 184 .67 RPM |
SRP017611_kidney | 0 .38 RPM | 253 .37 RPM |
SRP017611_liver | 0 .32 RPM | 225 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015834 | 6 retrocopies | |
Erinaceus europaeus | ENSEEUG00000001231 | 1 retrocopy |
retro_eeur_575 ,
|
Homo sapiens | ENSG00000254772 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013557 | 12 retrocopies | |
Latimeria chalumnae | ENSLACG00000014700 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003339 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006598 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000007691 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071644 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003528 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003768 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020075 | 8 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000002851 | 2 retrocopies |