RetrogeneDB ID: | retro_eeur_591 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_353077:9179..9480(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000014658 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.22 % |
Parental protein coverage: | 85.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISK |
.WQA.I.G.NDSPYQ...FF.TIHFP.DYPFK..KVAFTT.IYHPNINSNGSICLDIL...WSPALTISK | |
Retrocopy | YWQAIIVGLNDSPYQCEIFFMTIHFPADYPFKSSKVAFTTKIYHPNINSNGSICLDILQLEWSPALTISK |
Parental | VLLSICSLLCD-PNPDDPLVPEIARIYKTDR |
VLLSICSLLCD.PNPD.PLVPE.A.IYK... | |
Retrocopy | VLLSICSLLCD>PNPDHPLVPEVAQIYKIEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 42 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .51 RPM |
SRP017611_liver | 0 .00 RPM | 21 .54 RPM |