RetrogeneDB ID: | retro_eeur_597 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_357228:8107..8487(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN4 | ||
Ensembl ID: | ENSEEUG00000002733 | ||
Aliases: | None | ||
Description: | prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868] |
Percent Identity: | 85.94 % |
Parental protein coverage: | 94.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAATMKKAAAEDVN-VTFEDQQKINKFARNTSRITELKEEIEIKKKQLQNLEDACEDIMLADDDYLMIPY |
MA.TMK.AAAEDV..VT.EDQQKINKFA.NTSRITELKEEIEIKKKQLQNLEDACE.IMLADDDYLMI.Y | |
Retrocopy | MAPTMKNAAAEDVK<VTSEDQQKINKFAQNTSRITELKEEIEIKKKQLQNLEDACEKIMLADDDYLMILY |
Parental | QIGDVFISHSQEETQEMLEDAKKNLQEEIDTLESRVESIQRVLADLKVQLYAKFGSNI |
QIG..FISH.QEETQ.MLEDAKK.LQEEID..ESRVESIQ.VLADLK.QLYAKFGS.I | |
Retrocopy | QIGYIFISHLQEETQ*MLEDAKKSLQEEIDA*ESRVESIQWVLADLKIQLYAKFGSTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .13 RPM |
SRP017611_liver | 0 .00 RPM | 2 .57 RPM |