RetrogeneDB ID: | retro_eeur_606 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_360795:26846..27155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQFVRNLAEKAPTLINAAVTYSKPRLATFWQYAKVELVPPTPAEIPTAIQSLKKIVNSAKTGSFKHLTV |
MAQ.VRNL.EKA..LINAAVTYSKPRLATFWQY.KVELVPPTPAEIPTA.QSLKKIVNSA.TGSFKHLTV | |
Retrocopy | MAQLVRNLTEKALMLINAAVTYSKPRLATFWQYVKVELVPPTPAEIPTALQSLKKIVNSAETGSFKHLTV |
Parental | KXXXXXXXXXXEVWM-FYVGEIIGKR-LIGYNV |
K..........EVWM.FYVGEIIGK..LIGYNV | |
Retrocopy | KEAVLNGLVATEVWMWFYVGEIIGKHGLIGYNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .19 RPM | 24 .82 RPM |
SRP017611_kidney | 21 .57 RPM | 124 .15 RPM |
SRP017611_liver | 8 .04 RPM | 56 .91 RPM |