RetrogeneDB ID: | retro_eeur_607 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_361326:647..932(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB6 | ||
Ensembl ID: | ENSEEUG00000002083 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 6 [Source:HGNC Symbol;Acc:9543] |
Percent Identity: | 85.26 % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIEL |
TTIMAVQFD..VV.GADSRTTTGSYIA..VTDKLTPIH..IFCC..GSA.DTQ.VADAVTYQLGFHSIEL | |
Retrocopy | TTIMAVQFDRDVVSGADSRTTTGSYIAS*VTDKLTPIHE*IFCCHLGSATDTQTVADAVTYQLGFHSIEL |
Parental | NEPPLVHTAASLFKEMCYRYREELM |
NEPPLVHTAASLFKE.CYRY.EEL. | |
Retrocopy | NEPPLVHTAASLFKERCYRY*EELV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 35 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .83 RPM |
SRP017611_liver | 0 .00 RPM | 42 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000005851 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002083 | 3 retrocopies |
retro_eeur_203, retro_eeur_607 , retro_eeur_71,
|
Macropus eugenii | ENSMEUG00000010676 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005554 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019551 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000595 | 1 retrocopy |