RetrogeneDB ID: | retro_eeur_616 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_366654:64129..64740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSEEUG00000008944 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 88.83 % |
Parental protein coverage: | 75.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KAPPILPLPTTLPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQSVSEIPETTRMRPRP |
.APP.LPL.TTLPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQS..EIP.T.RM.P.P | |
Retrocopy | RAPPTLPLLTTLPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQSICEIPKT-RM*PQP |
Parental | RSRKHTTEDKKARIRKSCQMNEKKRDTSNIVEVTSTAQEAMLAAWGRITARASQPKATLSHPVPSSVETF |
RSRKHT.E.KK.RIRKSCQMNEK.RDTSNIV.VTSTA.EAML.AWGRITARASQPKAT.SH.VPSSVETF | |
Retrocopy | RSRKHTMEAKKTRIRKSCQMNEKERDTSNIVKVTSTAPEAMLTAWGRITARASQPKATHSHLVPSSVETF |
Parental | LPQATGI-RWCIVHGRPLSADTEGWVRLQFHVGQVWVPNTPRRMIPLFLLPACTFSTPDLEDNLLC |
LPQATGI..WCIVHGRPL.ADTEGWVRLQFHVGQVWVPNTPRRMIPLF.LPACTFSTPDLEDN.LC | |
Retrocopy | LPQATGI<QWCIVHGRPL*ADTEGWVRLQFHVGQVWVPNTPRRMIPLFPLPACTFSTPDLEDNILC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .56 RPM |
SRP017611_liver | 0 .00 RPM | 0 .32 RPM |