RetrogeneDB ID: | retro_eeur_649 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_374768:1220..2092(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003334 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000013364 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.82 % |
Parental protein coverage: | 79.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FASQEIAEKALKKHKERI-GHRYI-EIFK-SSRAEVRTHY-DPPRKLMAMQRPGPYDRPGAGRGYNSIGR |
FAS.E..EKA..KH.E...G.R.I.EIF..SSRA.VRTH...P....M.MQ.PGPYDRP..GRGYN..GR | |
Retrocopy | FASLENSEKAYNKHTEKE*GQRTI>EIFH>SSRAKVRTHL*SP*KSFMVMQSPGPYDRPWTGRGYNHHGR |
Parental | GAGFERMRRGAYGGGYGGSGDYGGYDDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMR |
G.GFE....GAYGGGYGG..D.GGY.DGYGFGSDRFGRDLN.CFSG.SDHRYGDGGS.FQSTT.H.VHMR | |
Retrocopy | GTGFEKDEPGAYGGGYGGYDDSGGYNDGYGFGSDRFGRDLNSCFSGKSDHRYGDGGSSFQSTTAHSVHMR |
Parental | GLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNST |
GLPYRATENDIYNFFSPLNP.RVHIEIGPDGRVTGEADVE.ATHEDAVAAM.KDKANMQHRYVELFLNST | |
Retrocopy | GLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVESATHEDAVAAMAKDKANMQHRYVELFLNST |
Parental | AGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYG |
AG.SGGAY.H.YVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY. | |
Retrocopy | AGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYD |
Parental | SQGTVNSSYYSS |
.....NSS.Y.S | |
Retrocopy | QVLQENSSDYQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 62 .36 RPM | 170 .49 RPM |
SRP017611_kidney | 44 .82 RPM | 233 .67 RPM |
SRP017611_liver | 20 .10 RPM | 93 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003841 | 4 retrocopies | |
Equus caballus | ENSECAG00000014429 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010991 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013364 | 2 retrocopies |
retro_eeur_478, retro_eeur_649 ,
|
Echinops telfairi | ENSETEG00000011303 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015766 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000016625 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010843 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009436 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000003513 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006715 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007670 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003024 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018204 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007485 | 2 retrocopies |