RetrogeneDB ID: | retro_eeur_67 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_3912:56685..57180(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXN2 | ||
Ensembl ID: | ENSEEUG00000010654 | ||
Aliases: | None | ||
Description: | thioredoxin 2 [Source:HGNC Symbol;Acc:17772] |
Percent Identity: | 90.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQRLLLRRFLASISWKPPQARLAPLCSRALPTPQHSPSGLAVIPSQVRSIFTTKVSTTTFNIQDGPDFQ |
MAQ.LLLRRFLASISWKPPQ..LAPLCSR.L.TP.HSPSGLAVIPSQVRS.FTTKVSTTTFNIQDGP.FQ | |
Retrocopy | MAQPLLLRRFLASISWKPPQGGLAPLCSRPLQTPWHSPSGLAVIPSQVRSVFTTKVSTTTFNIQDGPNFQ |
Parental | DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQQGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKN |
DRVV.SE.PVVVDFH.QWCGPC.IL.PRLEKMVAKQQGKVVMAKVDIDDHTDLA.EYEVSAVPTVLAMKN | |
Retrocopy | DRVVDSESPVVVDFHTQWCGPCRILSPRLEKMVAKQQGKVVMAKVDIDDHTDLAMEYEVSAVPTVLAMKN |
Parental | GDVVDKFVGIKDEDQLEAFLKKLID |
GDVVDKFVGIKDEDQLEAFL.KL.D | |
Retrocopy | GDVVDKFVGIKDEDQLEAFLRKLTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .26 RPM | 12 .89 RPM |
SRP017611_kidney | 3 .94 RPM | 28 .88 RPM |
SRP017611_liver | 2 .89 RPM | 27 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000013929 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010654 | 2 retrocopies |
retro_eeur_554, retro_eeur_67 ,
|
Homo sapiens | ENSG00000100348 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028091 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015841 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000837 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002012 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000670 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006612 | 1 retrocopy |