RetrogeneDB ID: | retro_eeur_75 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_4441:36950..37284(+) | ||
Located in intron of: | ENSEEUG00000010370 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSEEUG00000003392 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 52.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSG |
TE.AY..Q.T.FQ.K..VLL..TGKEKLPRYYKNI.LGF.T.KEA...TY.DKK.............LS. | |
Retrocopy | TECAY*EQLTFFQIKNKVLLRGTGKEKLPRYYKNISLGFRTSKEATGDTYNDKKYALSSKTFF*RQMLSS |
Parental | VVTKMKMQRTIVIRRDYLHYIKYNRFEKRHKN-MSVHL-PCF |
VV.KMKMQRT.V...D..............KN.MS.HL.PCF | |
Retrocopy | VVNKMKMQRTNVNHWDCFQ*TRSAAALRSAKN>MSIHLSPCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 46 .25 RPM |
SRP017611_kidney | 1 .13 RPM | 160 .16 RPM |
SRP017611_liver | 0 .00 RPM | 91 .64 RPM |