RetrogeneDB ID: | retro_eeur_85 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_5309:315609..315885(-) | ||
Located in intron of: | ENSEEUG00000012227 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSEEUG00000006187 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 85.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIXXXXXXXXXXXDA-EIHSKTKS |
MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII...........DA.EIHSKTKS | |
Retrocopy | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS |
Parental | RKQLG-IMLKGDNITLLQSVSN |
RKQLG.IMLKGDNITLLQSVSN | |
Retrocopy | RKQLGRIMLKGDNITLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 15 .95 RPM | 1 .13 RPM |
SRP017611_kidney | 24 .38 RPM | 1 .88 RPM |
SRP017611_liver | 7 .40 RPM | 1 .13 RPM |