RetrogeneDB ID: | retro_eeur_91 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_5567:92875..93295(-) | ||
Located in intron of: | ENSEEUG00000001812 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKI67IP | ||
Ensembl ID: | ENSEEUG00000008535 | ||
Aliases: | None | ||
Description: | MKI67 (FHA domain) interacting nucleolar phosphoprotein [Source:HGNC Symbol;Acc:17838] |
Percent Identity: | 86.01 % |
Parental protein coverage: | 60.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ESEDVAKIVAETMNNYLFGERLLKCHFVPHEKVHEELFKNCCVPFRKPSFPAVKRYNQTRSLLQKLQMER |
ESEDV.KIV.ETMNNYLFG.RLLKCHFVPHEKVHEELFKNC.VPFRKPSFP.VK.YN..RSLL.KLQMER | |
Retrocopy | ESEDVPKIVVETMNNYLFGKRLLKCHFVPHEKVHEELFKNCYVPFRKPSFPVVKGYNGDRSLL*KLQMER |
Parental | RFQKKENLLRKKLAKKGIDYEFSPLILHKKGKKSASSAD-PDMSTKSQVLPKKKKKKI-SVSSDTPEKTV |
RFQKKENLLRKKLAKKGIDYEFS.LILHKK.K.SAS.A..PDMSTKSQVLPKK.KKK....SSDTPEKTV | |
Retrocopy | RFQKKENLLRKKLAKKGIDYEFSLLILHKKEKESASTAG>PDMSTKSQVLPKK-KKKE<GLSSDTPEKTV |
Parental | DSQ |
DSQ | |
Retrocopy | DSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 3 .06 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .75 RPM |
SRP017611_liver | 0 .00 RPM | 4 .34 RPM |