RetrogeneDB ID: | retro_eeur_99 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_6204:5195..5516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSEEUG00000011531 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 90.65 % |
Parental protein coverage: | 60.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGL |
LYISECLKKLQKCNSKSQGEKEMYTLGI.N.P.PGEPGFPLNAIYA.PANKQEDEVMRAYLQQLRQE.GL | |
Retrocopy | LYISECLKKLQKCNSKSQGEKEMYTLGIANSPFPGEPGFPLNAIYARPANKQEDEVMRAYLQQLRQEIGL |
Parental | RLCEKVFDPQN-DKPSKWWTCFVKRQFMNKSLSGPGQ |
RL.EKVFDPQN.DKPSKWWTCFVKRQ...KSLSGPGQ | |
Retrocopy | RLWEKVFDPQNLDKPSKWWTCFVKRQCIYKSLSGPGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 107 .97 RPM |
SRP017611_kidney | 0 .19 RPM | 102 .40 RPM |
SRP017611_liver | 0 .16 RPM | 51 .93 RPM |