RetrogeneDB ID: | retro_etel_1001 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_198946:5525..5977(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSETEG00000005968 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 73.03 % |
Parental protein coverage: | 96.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SPATAPHPLKMYACAKFVSTPSLVRSTSQLLSRPLSVLVQKRP-ETLSDERFSSLTAPRSQTSLVPSRSF |
SP.T.PHPLK..ACAKFVS.PSLVRSTSQL...PL.VL..K.P..TL.DE.F.SL..P.S.TSL.PSRSF | |
Retrocopy | SPSTVPHPLKIFACAKFVSIPSLVRSTSQLMR*PLFVLAEKQP<QTLTDE*FRSLAVPCSLTSLIPSRSF |
Parental | QTSTVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF |
QTST.SRD.DTA..FIGAGAATVGVA.S.A.IG...GSL..GYARNPSLKQQLFSY.IL.FAL..AMGLF | |
Retrocopy | QTSTISRDTDTASNFIGAGAATVGVAISEASIGIGCGSLLLGYARNPSLKQQLFSYIILSFALLKAMGLF |
Parental | CLMVAFLILFAM |
CLM.AFL.LFA. | |
Retrocopy | CLMFAFLMLFAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |