RetrogeneDB ID: | retro_etel_101 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1871:3003..3880(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS72 | ||
Ensembl ID: | ENSETEG00000004257 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 72 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11644] |
Percent Identity: | 86.24 % |
Parental protein coverage: | 84.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEA-EEPRRKRRIVTKAYKEPLKSLRPRKVSTPAG |
T...G..E..GD.....D..D.....DE.D.....GEA.EEPRRKRRIVTK..KEPL..LRPRKVSTPAG | |
Retrocopy | TTYGGFTEEAGDDEYQGDQSDTE---DEADSDFDIGEA<EEPRRKRRIVTKP*KEPLRGLRPRKVSTPAG |
Parental | SSQKAREEKALLPLELQDDGSDSRKCMRQSTAEHTRQTFLRVQERQGQSRRRKGPHYERPLTQEELLREA |
SSQKA.EEKALLP.ELQDDGSDSRKCMRQSTAEHTRQTF.RVQERQGQSRRRKGPHYERPLTQEELLREA | |
Retrocopy | SSQKAPEEKALLPFELQDDGSDSRKCMRQSTAEHTRQTFPRVQERQGQSRRRKGPHYERPLTQEELLREA |
Parental | KITEE-LNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDVEGLEPGPTAST |
KITE..LNLRSLETYERLEADKKKQVHKKRK.PGPIIT.HSVTVPLVGEPGPK.ENVDVEGLEPGPTAST | |
Retrocopy | KITEG<LNLRSLETYERLEADKKKQVHKKRKGPGPIITHHSVTVPLVGEPGPKQENVDVEGLEPGPTAST |
Parental | LTPHAGTGPVIPAARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARA |
LTPHAGTGPVIPAARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYA.ARA | |
Retrocopy | LTPHAGTGPVIPAARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYASARA |
Parental | FKIIREAYKKYITAHGLP |
F..IREAYKKYITAHGLP | |
Retrocopy | FRLIREAYKKYITAHGLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000824 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012540 | 1 retrocopy | |
Equus caballus | ENSECAG00000017754 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004257 | 1 retrocopy |
retro_etel_101 ,
|
Mustela putorius furo | ENSMPUG00000004027 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008958 | 1 retrocopy |